Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs10831514 | chr11:96096286 | A/G | 8.23E-5 | 488 | 15.77 | 15.9 | 19.83 | KM Plot |
| THCA | rs10831515 | chr11:96097210 | T/C | 7.53E-5 | 486 | 15.83 | 15.9 | 22.45 | KM Plot |
| THCA | rs10831519 | chr11:96116444 | T/C | 3.06E-6 | 476 | 15.87 | 15.25 | 22.45 | KM Plot |
| THCA | rs10831520 | chr11:96128840 | C/T | 2.95E-5 | 471 | 15.7 | 15.33 | 20.5 | KM Plot |
| THCA | rs10835662 | chr11:4153767 | A/G | 1.61E-7 | 490 | 19.05 | 13.97 | 16.37 | KM Plot |
| THCA | rs10835669 | chr11:4159324 | T/C | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10835674 | chr11:4163955 | A/G | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10835679 | chr11:4167432 | C/T | 3.09E-6 | 490 | 16.38 | 13.97 | 18.23 | KM Plot |
| THCA | rs10848242 | chr12:131369866 | G/A | 7.73E-5 | 486 | 16.02 | 15 | 15.9 | KM Plot |
| THCA | rs10850309 | chr12:109483031 | G/A | 7.21E-5 | 482 | 15.97 | 15.23 | 12.1 | KM Plot |
| THCA | rs10850717 | chr12:109507848 | G/T | 2.17E-7 | 473 | 16.07 | 16.87 | 6.17 | KM Plot |
| THCA | rs10852246 | chr16:20733134 | G/A | 3.38E-5 | 490 | 16.37 | 14.63 | 17.65 | KM Plot |
| THCA | rs10871282 | chr16:84136115 | G/C | 0 | 486 | 5.8 | 17.83 | 15.48 | KM Plot |
| THCA | rs1087453 | chr6:119266210 | G/A | 0.000299 | 488 | 16.37 | 14.27 | 21.77 | KM Plot |
| THCA | rs1087454 | chr6:119266432 | C/A | 0.000299 | 488 | 16.37 | 14.27 | 21.77 | KM Plot |